org.scijava.io

Class AbstractDataHandle<L extends Location>

java.lang.Object

org.scijava.AbstractContextual

org.scijava.plugin.AbstractRichPlugin

org.scijava.plugin.AbstractTypedPlugin<D>

org.scijava.plugin.AbstractWrapperPlugin<L>

org.scijava.io.AbstractDataHandle<L>

All Implemented Interfaces:

Closeable, DataInput, DataOutput, AutoCloseable, Comparable<Prioritized>, Contextual, DataHandle<L>, HasPluginInfo, RichPlugin, SciJavaPlugin, TypedPlugin<L>, WrapperPlugin<L>, Prioritized, Typed<L>

Direct Known Subclasses:

FileHandle

public abstract class AbstractDataHandle<L extends Location>
extends AbstractWrapperPlugin<L>
implements DataHandle<L>

Abstract base class for DataHandle plugins.

Author:

Curtis Rueden

Constructor Summary

Constructors

Constructor and Description
AbstractDataHandle()

Method Summary

Methods

Modifier and Type	Method and Description
String	findString(boolean saveString, int blockSize, String... terminators) Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
String	findString(boolean saveString, String... terminators) Reads or skips a string ending with one of the given terminating substrings.
String	findString(int blockSize, String... terminators) Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
String	findString(String... terminators) Reads a string ending with one of the given terminating substrings.
String	getEncoding() Gets the native encoding of the stream.
ByteOrder	getOrder() Returns the current order of the stream.
boolean	isLittleEndian() Gets the endianness of the stream.
int	read(byte[] b) Reads up to b.length bytes of data from the stream into an array of bytes.
int	read(ByteBuffer buf) Reads up to buf.remaining() bytes of data from the stream into a ByteBuffer.
int	read(ByteBuffer buf, int len) Reads up to len bytes of data from the stream into a ByteBuffer.
String	readCString() Reads a string of arbitrary length, terminated by a null char.
String	readString(int n) Reads a string of up to length n.
String	readString(String lastChars) Reads a string ending with one of the characters in the given string.
void	setEncoding(String encoding) Sets the native encoding of the stream.
void	setOrder(boolean little) Sets the endianness of the stream.
void	setOrder(ByteOrder order) Sets the byte order of the stream.
long	skip(long n) Skips over and discards n bytes of data from the stream.
void	write(ByteBuffer buf) Writes up to buf.remaining() bytes of data from the given ByteBuffer to the stream.
void	write(ByteBuffer buf, int len) Writes up to len bytes of data from the given ByteBuffer to the stream.

Methods inherited from class org.scijava.plugin.AbstractWrapperPlugin

get, set

Methods inherited from class org.scijava.plugin.AbstractTypedPlugin

supports

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

compareTo, getInfo, getPriority, setInfo, setPriority, toString

Methods inherited from class org.scijava.AbstractContextual

context, getContext, setContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.io.DataHandle

length, offset, read, read, seek

Methods inherited from interface org.scijava.plugin.WrapperPlugin

get, set

Methods inherited from interface org.scijava.Contextual

context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized

getPriority, setPriority

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface org.scijava.plugin.HasPluginInfo

getInfo, setInfo

Methods inherited from interface org.scijava.Typed

getType, supports

Methods inherited from interface java.io.DataInput

readBoolean, readByte, readChar, readDouble, readFloat, readFully, readFully, readInt, readLine, readLong, readShort, readUnsignedByte, readUnsignedShort, readUTF, skipBytes

Methods inherited from interface java.io.DataOutput

write, write, write, writeBoolean, writeByte, writeBytes, writeChar, writeChars, writeDouble, writeFloat, writeInt, writeLong, writeShort, writeUTF

Methods inherited from interface java.io.Closeable

close

Constructor Detail

AbstractDataHandle

public AbstractDataHandle()

Method Detail

getOrder

public ByteOrder getOrder()

Description copied from interface: DataHandle

Returns the current order of the stream.

Specified by:

getOrder in interface DataHandle<L extends Location>

Returns:

See above.

isLittleEndian

public boolean isLittleEndian()

Description copied from interface: DataHandle

Gets the endianness of the stream.

Specified by:

isLittleEndian in interface DataHandle<L extends Location>

setOrder

public void setOrder(ByteOrder order)

Description copied from interface: DataHandle

Sets the byte order of the stream.

Specified by:

setOrder in interface DataHandle<L extends Location>

Parameters:

order - Order to set.

setOrder

public void setOrder(boolean little)

Description copied from interface: DataHandle

Sets the endianness of the stream.

Specified by:

setOrder in interface DataHandle<L extends Location>

getEncoding

public String getEncoding()

Description copied from interface: DataHandle

Gets the native encoding of the stream.

Specified by:

getEncoding in interface DataHandle<L extends Location>

setEncoding

public void setEncoding(String encoding)

Description copied from interface: DataHandle

Sets the native encoding of the stream.

Specified by:

setEncoding in interface DataHandle<L extends Location>

read

public int read(ByteBuffer buf)
         throws IOException

Description copied from interface: DataHandle

Reads up to buf.remaining() bytes of data from the stream into a ByteBuffer.

Specified by:

read in interface DataHandle<L extends Location>

Throws:

IOException

read

public int read(ByteBuffer buf,
       int len)
         throws IOException

Description copied from interface: DataHandle

Reads up to len bytes of data from the stream into a ByteBuffer.

Specified by:

read in interface DataHandle<L extends Location>

Returns:

the total number of bytes read into the buffer.

Throws:

IOException

write

public void write(ByteBuffer buf)
           throws IOException

Description copied from interface: DataHandle

Writes up to buf.remaining() bytes of data from the given ByteBuffer to the stream.

Specified by:

write in interface DataHandle<L extends Location>

Throws:

IOException

write

public void write(ByteBuffer buf,
         int len)
           throws IOException

Description copied from interface: DataHandle

Writes up to len bytes of data from the given ByteBuffer to the stream.

Specified by:

write in interface DataHandle<L extends Location>

Throws:

IOException

readCString

public String readCString()
                   throws IOException

Description copied from interface: DataHandle

Reads a string of arbitrary length, terminated by a null char.

Specified by:

readCString in interface DataHandle<L extends Location>

Throws:

IOException

readString

public String readString(int n)
                  throws IOException

Description copied from interface: DataHandle

Reads a string of up to length n.

Specified by:

readString in interface DataHandle<L extends Location>

Throws:

IOException

readString

public String readString(String lastChars)
                  throws IOException

Description copied from interface: DataHandle

Reads a string ending with one of the characters in the given string.

Specified by:

readString in interface DataHandle<L extends Location>

Throws:

IOException

See Also:

DataHandle.findString(String...)

findString

public String findString(String... terminators)
                  throws IOException

Description copied from interface: DataHandle

Reads a string ending with one of the given terminating substrings.

Specified by:

findString in interface DataHandle<L extends Location>

Parameters:

terminators - The strings for which to search.

Returns:

The string from the initial position through the end of the terminating sequence, or through the end of the stream if no terminating sequence is found.

Throws:

IOException

findString

public String findString(boolean saveString,
                String... terminators)
                  throws IOException

Description copied from interface: DataHandle

Reads or skips a string ending with one of the given terminating substrings.

Specified by:

findString in interface DataHandle<L extends Location>

Parameters:

saveString - Whether to collect the string from the current file pointer to the terminating bytes, and return it. If false, returns null.

terminators - The strings for which to search.

Returns:

The string from the initial position through the end of the terminating sequence, or through the end of the stream if no terminating sequence is found, or null if saveString flag is unset.

Throws:

IOException - If saveString flag is set and the maximum search length (512 MB) is exceeded.

findString

public String findString(int blockSize,
                String... terminators)
                  throws IOException

Description copied from interface: DataHandle

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

Specified by:

findString in interface DataHandle<L extends Location>

Parameters:

blockSize - The block size to use when reading bytes in chunks.

terminators - The strings for which to search.

Returns:

The string from the initial position through the end of the terminating sequence, or through the end of the stream if no terminating sequence is found.

Throws:

IOException

findString

public String findString(boolean saveString,
                int blockSize,
                String... terminators)
                  throws IOException

Description copied from interface: DataHandle

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

Specified by:

findString in interface DataHandle<L extends Location>

Parameters:

saveString - Whether to collect the string from the current file pointer to the terminating bytes, and return it. If false, returns null.

blockSize - The block size to use when reading bytes in chunks.

terminators - The strings for which to search.

Returns:

The string from the initial position through the end of the terminating sequence, or through the end of the stream if no terminating sequence is found, or null if saveString flag is unset.

Throws:

IOException - If saveString flag is set and the maximum search length (512 MB) is exceeded.

read

public int read(byte[] b)
         throws IOException

Description copied from interface: DataHandle

Reads up to b.length bytes of data from the stream into an array of bytes.

Specified by:

read in interface DataHandle<L extends Location>

Returns:

the total number of bytes read into the buffer.

Throws:

IOException

skip

public long skip(long n)
          throws IOException

Description copied from interface: DataHandle

Skips over and discards n bytes of data from the stream. The skip method may, for a variety of reasons, end up skipping over some smaller number of bytes, possibly 0. This may result from any of a number of conditions; reaching end of file before n bytes have been skipped is only one possibility. The actual number of bytes skipped is returned. If n is negative, no bytes are skipped.

Specified by:

skip in interface DataHandle<L extends Location>

Parameters:

n - - the number of bytes to be skipped.

Returns:

the actual number of bytes skipped.

Throws:

IOException - - if an I/O error occurs.