gate.annotation

Class CorpusAnnotationDiff

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

gate.creole.AbstractVisualResource

gate.annotation.CorpusAnnotationDiff

All Implemented Interfaces:

Resource, FeatureBearer, NameBearer, VisualResource, ImageObserver, MenuContainer, Serializable, Accessible, Scrollable

public class CorpusAnnotationDiff
extends AbstractVisualResource
implements Scrollable

This class compare two annotation sets on annotation type given by the AnnotationSchema object. It also deals with graphic representation of the result.

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	CorpusAnnotationDiff.AnnotationDiffCellRenderer This class defines a Cell renderer for the AnnotationDiff table
protected class	CorpusAnnotationDiff.AnnotationDiffTableModel A custom table model used to render a table containing the two annotation sets.
protected class	CorpusAnnotationDiff.DiffSetElement This class is used for internal purposes.

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
static int	CORRECT_TYPE A correct type when all annotation are corect represented by Green color
static int	DEFAULT_TYPE A default type when all annotation are the same represented by White color
static int	MAX_TYPES Field designated to represent the max nr of annot types and coolors for each type
protected int	maxUnitIncrement
static int	MISSING_TYPE A missing type when annotations in key were not present in response Represented by Yellow color
static int	PARTIALLY_CORRECT_TYPE A partially correct type when all annotation are corect represented by Blue color
static int	SPURIOUS_TYPE A spurious type when annotations in response were not present in key.
static double	weight The weight used in F-measure (see NLP Information Extraction)

Fields inherited from class gate.creole.AbstractVisualResource

features, handle

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
CorpusAnnotationDiff() Constructs a CorpusAnnotationDiff

Method Summary

Methods

Modifier and Type	Method and Description
protected void	arangeAllComponents() This method creates the graphic components and aranges them on this JPanel
protected void	doDiff(List<Annotation> aKeyAnnotList, List<Annotation> aResponseAnnotList) This method is the brain of the AnnotationSet diff and creates a set with diffSetElement objects.
AnnotationSchema	getAnnotationSchema()
Set<Annotation>	getAnnotationsOfType(int annotType) Returns a set with all annotations of a specific type
String	getAnnotationTypeForFalsePositive() Gets the annotation type needed to calculate the falsePossitive measure
double	getFalsePositiveAverage()
double	getFalsePositiveLenient()
double	getFalsePositiveStrict()
double	getFMeasureAverage()
double	getFMeasureLenient()
double	getFMeasureStrict()
String	getKeyAnnotationSetName() Gets the keyAnnotationSetName.
Corpus	getKeyCorpus()
Set<?>	getKeyFeatureNamesSet() Gets the keyFeatureNamesSet in AnnotDiff.
Object	getParameterValue(String paramaterName) Gets the value of a parameter of this resource.
double	getPrecisionAverage()
double	getPrecisionLenient()
double	getPrecisionStrict()
Dimension	getPreferredScrollableViewportSize()
double	getRecallAverage()
double	getRecallLenient()
double	getRecallStrict()
String	getResponseAnnotationSetName() gets the responseAnnotationSetName.
String	getResponseAnnotationSetNameFalsePoz() gets the responseAnnotationSetNameFalsePoz.
int	getScrollableBlockIncrement(Rectangle visibleRect, int orientation, int direction)
boolean	getScrollableTracksViewportHeight()
boolean	getScrollableTracksViewportWidth()
int	getScrollableUnitIncrement(Rectangle visibleRect, int orientation, int direction)
Resource	init() This method does the diff, Precision,Recall,FalsePositive calculation and so on.
boolean	isTextMode() Gets the annot diff textmode.True means that the text mode is activated.
protected void	printStructure(Set<CorpusAnnotationDiff.DiffSetElement> aDiffSet) Used internally for debugging
void	setAnnotationSchema(AnnotationSchema anAnnotationSchema)
void	setAnnotationTypeForFalsePositive(String anAnnotType) Sets the annotation type needed to calculate the falsePossitive measure
void	setKeyAnnotationSetName(String aKeyAnnotationSetName) Sets the keyAnnotationSetName in AnnotDiff
void	setKeyCorpus(Corpus aKeyCorpus) Sets the keyCorpus in AnnotDiff
void	setKeyFeatureNamesSet(Set<?> aKeyFeatureNamesSet) Sets the keyFeatureNamesSet in AnnotDiff.
void	setParameterValue(String paramaterName, Object parameterValue) Sets the value for a specified parameter.
void	setParameterValues(FeatureMap parameters) Sets the values for more parameters in one step.
void	setResponseAnnotationSetName(String aResponseAnnotationSetName) Sets the responseAnnotationSetName in AnnotDiff
void	setResponseAnnotationSetNameFalsePoz(String aResponseAnnotationSetNameFalsePoz) Sets the responseAnnotationSetNameFalsePoz in AnnotDiff
void	setResponseCorpus(Corpus aResponseCorpus)
void	setTextMode(Boolean aTextMode) Sets the annot diff to work in the text mode.This would not initiate the GUI part of annot diff but it would calculate precision etc

Methods inherited from class gate.creole.AbstractVisualResource

cleanup, getFeatures, getInitParameterValues, setFeatures, setHandle, setTarget

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gate.util.NameBearer

getName, setName

Field Detail

maxUnitIncrement

protected int maxUnitIncrement

weight

public static double weight

The weight used in F-measure (see NLP Information Extraction)

MAX_TYPES

public static final int MAX_TYPES

Field designated to represent the max nr of annot types and coolors for each type

See Also:

Constant Field Values

DEFAULT_TYPE

public static final int DEFAULT_TYPE

A default type when all annotation are the same represented by White color

See Also:

Constant Field Values

CORRECT_TYPE

public static final int CORRECT_TYPE

A correct type when all annotation are corect represented by Green color

See Also:

Constant Field Values

PARTIALLY_CORRECT_TYPE

public static final int PARTIALLY_CORRECT_TYPE

A partially correct type when all annotation are corect represented by Blue color

See Also:

Constant Field Values

SPURIOUS_TYPE

public static final int SPURIOUS_TYPE

A spurious type when annotations in response were not present in key. Represented by Red color

See Also:

Constant Field Values

MISSING_TYPE

public static final int MISSING_TYPE

A missing type when annotations in key were not present in response Represented by Yellow color

See Also:

Constant Field Values

Constructor Detail

CorpusAnnotationDiff

public CorpusAnnotationDiff()

Constructs a CorpusAnnotationDiff

Method Detail

setAnnotationTypeForFalsePositive

public void setAnnotationTypeForFalsePositive(String anAnnotType)

Sets the annotation type needed to calculate the falsePossitive measure

Parameters:

anAnnotType - is the annotation type needed to calculate a special mesure called falsePossitive. Usualy the value is "token", but it can be any other string with the same semantic.

getAnnotationTypeForFalsePositive

public String getAnnotationTypeForFalsePositive()

Gets the annotation type needed to calculate the falsePossitive measure

Returns:

annotation type needed to calculate a special mesure called falsePossitive.

setKeyCorpus

public void setKeyCorpus(Corpus aKeyCorpus)

Sets the keyCorpus in AnnotDiff

Parameters:

aKeyCorpus - The GATE corpus used as a key in annotation diff.

getKeyCorpus

public Corpus getKeyCorpus()

Returns:

the keyCorpus used in AnnotDiff process

setKeyAnnotationSetName

public void setKeyAnnotationSetName(String aKeyAnnotationSetName)

Sets the keyAnnotationSetName in AnnotDiff

Parameters:

aKeyAnnotationSetName - The name of the annotation set from the keyDocument.If aKeyAnnotationSetName is null then the default annotation set will be used.

getKeyAnnotationSetName

public String getKeyAnnotationSetName()

Gets the keyAnnotationSetName.

Returns:

The name of the keyAnnotationSet used in AnnotationDiff. If returns null then the the default annotation set will be used.

setKeyFeatureNamesSet

public void setKeyFeatureNamesSet(Set<?> aKeyFeatureNamesSet)

Sets the keyFeatureNamesSet in AnnotDiff.

Parameters:

aKeyFeatureNamesSet - a set containing the feature names from key that will be used in isPartiallyCompatible()

getKeyFeatureNamesSet

public Set<?> getKeyFeatureNamesSet()

Gets the keyFeatureNamesSet in AnnotDiff.

Returns:

A set containing the feature names from key that will be used in isPartiallyCompatible()

setResponseAnnotationSetName

public void setResponseAnnotationSetName(String aResponseAnnotationSetName)

Sets the responseAnnotationSetName in AnnotDiff

Parameters:

aResponseAnnotationSetName - The name of the annotation set from the responseDocument.If aResponseAnnotationSetName is null then the default annotation set will be used.

getResponseAnnotationSetName

public String getResponseAnnotationSetName()

gets the responseAnnotationSetName.

Returns:

The name of the responseAnnotationSet used in AnnotationDiff. If returns null then the the default annotation set will be used.

setResponseAnnotationSetNameFalsePoz

public void setResponseAnnotationSetNameFalsePoz(String aResponseAnnotationSetNameFalsePoz)

Sets the responseAnnotationSetNameFalsePoz in AnnotDiff

Parameters:

aResponseAnnotationSetNameFalsePoz - The name of the annotation set from the responseDocument.If aResponseAnnotationSetName is null then the default annotation set will be used.

getResponseAnnotationSetNameFalsePoz

public String getResponseAnnotationSetNameFalsePoz()

gets the responseAnnotationSetNameFalsePoz.

Returns:

The name of the responseAnnotationSetFalsePoz used in AnnotationDiff. If returns null then the the default annotation set will be used.

setTextMode

public void setTextMode(Boolean aTextMode)

Sets the annot diff to work in the text mode.This would not initiate the GUI part of annot diff but it would calculate precision etc

isTextMode

public boolean isTextMode()

Gets the annot diff textmode.True means that the text mode is activated.

getAnnotationsOfType

public Set<Annotation> getAnnotationsOfType(int annotType)

Returns a set with all annotations of a specific type

getParameterValue

public Object getParameterValue(String paramaterName)
                         throws ResourceInstantiationException

Gets the value of a parameter of this resource.

Specified by:

getParameterValue in interface Resource

Overrides:

getParameterValue in class AbstractVisualResource

Parameters:

paramaterName - the name of the parameter

Returns:

the current value of the parameter

Throws:

ResourceInstantiationException

setParameterValue

public void setParameterValue(String paramaterName,
                     Object parameterValue)
                       throws ResourceInstantiationException

Sets the value for a specified parameter.

Specified by:

setParameterValue in interface Resource

Overrides:

setParameterValue in class AbstractVisualResource

Parameters:

paramaterName - the name for the parameteer

parameterValue - the value the parameter will receive

Throws:

ResourceInstantiationException

setParameterValues

public void setParameterValues(FeatureMap parameters)
                        throws ResourceInstantiationException

Sets the values for more parameters in one step.

Specified by:

setParameterValues in interface Resource

Overrides:

setParameterValues in class AbstractVisualResource

Parameters:

parameters - a feature map that has paramete names as keys and parameter values as values.

Throws:

ResourceInstantiationException

getPrecisionStrict

public double getPrecisionStrict()

Returns:

the precisionStrict field

getPrecisionLenient

public double getPrecisionLenient()

Returns:

the precisionLenient field

getPrecisionAverage

public double getPrecisionAverage()

Returns:

the precisionAverage field

getFMeasureStrict

public double getFMeasureStrict()

Returns:

the fMeasureStrict field

getFMeasureLenient

public double getFMeasureLenient()

Returns:

the fMeasureLenient field

getFMeasureAverage

public double getFMeasureAverage()

Returns:

the fMeasureAverage field

getRecallStrict

public double getRecallStrict()

Returns:

the recallStrict field

getRecallLenient

public double getRecallLenient()

Returns:

the recallLenient field

getRecallAverage

public double getRecallAverage()

Returns:

the recallAverage field

getFalsePositiveStrict

public double getFalsePositiveStrict()

Returns:

the falsePositiveStrict field

getFalsePositiveLenient

public double getFalsePositiveLenient()

Returns:

the falsePositiveLenient field

getFalsePositiveAverage

public double getFalsePositiveAverage()

Returns:

the falsePositiveAverage field

setResponseCorpus

public void setResponseCorpus(Corpus aResponseCorpus)

Parameters:

aResponseCorpus - the GATE response corpus containing the annotation Set being compared against the annotation from the keyCorpus.

setAnnotationSchema

public void setAnnotationSchema(AnnotationSchema anAnnotationSchema)

Parameters:

anAnnotationSchema - the annotation type being compared. This type is found in annotationSchema object as field AnnotationSchema.getAnnotationName(). If is null then AnnotDiff will throw an exception when it comes to do the diff.

getAnnotationSchema

public AnnotationSchema getAnnotationSchema()

Returns:

the annotation schema object used in annotation diff process

getPreferredScrollableViewportSize

public Dimension getPreferredScrollableViewportSize()

Specified by:

getPreferredScrollableViewportSize in interface Scrollable

getScrollableUnitIncrement

public int getScrollableUnitIncrement(Rectangle visibleRect,
                             int orientation,
                             int direction)

Specified by:

getScrollableUnitIncrement in interface Scrollable

getScrollableBlockIncrement

public int getScrollableBlockIncrement(Rectangle visibleRect,
                              int orientation,
                              int direction)

Specified by:

getScrollableBlockIncrement in interface Scrollable

getScrollableTracksViewportWidth

public boolean getScrollableTracksViewportWidth()

Specified by:

getScrollableTracksViewportWidth in interface Scrollable

getScrollableTracksViewportHeight

public boolean getScrollableTracksViewportHeight()

Specified by:

getScrollableTracksViewportHeight in interface Scrollable

init

public Resource init()
              throws ResourceInstantiationException

This method does the diff, Precision,Recall,FalsePositive calculation and so on.

Specified by:

init in interface Resource

Overrides:

init in class AbstractVisualResource

Throws:

ResourceInstantiationException

arangeAllComponents

protected void arangeAllComponents()

This method creates the graphic components and aranges them on this JPanel

printStructure

protected void printStructure(Set<CorpusAnnotationDiff.DiffSetElement> aDiffSet)

Used internally for debugging

doDiff

protected void doDiff(List<Annotation> aKeyAnnotList,
          List<Annotation> aResponseAnnotList)

This method is the brain of the AnnotationSet diff and creates a set with diffSetElement objects.

Parameters:

aKeyAnnotList - a list containing the annotations from key. If this param is null then the method will simply return and will not do a thing.

aResponseAnnotList - a list containing the annotation from response. If this param is null the method will return.