Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

5.  val asciiOffset: Int

   Definition Classes

   Standard → QualityEncoding

6.  lazy val asciiRange: Range

   The valid range of ascii characters (as ints).

   The valid range of ascii characters (as ints).

   Definition Classes

   QualityEncoding

7.  def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8.  final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

9.  def equals(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

10.  def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

11.  final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

12.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

13.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

14.  final def notify(): Unit

    Definition Classes

    AnyRef

15.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

16.  val numericRange: Range

    Definition Classes

    Standard → QualityEncoding

17.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

18.  def toStandardAscii(qs: String): String

    Converts a String in one ascii encoding to another.

    Converts a String in one ascii encoding to another.

    Definition Classes

    Standard → QualityEncoding

19.  def toStandardAscii(ch: Char): Char

    Converts a character from one ascii encoding another

    Converts a character from one ascii encoding another

    Definition Classes

    Standard → QualityEncoding

20.  def toStandardNumeric(q: Byte): Byte

    Must be implemented to convert from a numeric quality score in the given format to a numeric quality score in standard format (i.e.

    Must be implemented to convert from a numeric quality score in the given format to a numeric quality score in standard format (i.e. -10*log10(pError)).

    Definition Classes

    Standard → QualityEncoding

21.  def toStandardNumeric(qs: String): Array[Byte]

    Converts a String of quality scores in the given format into standard numeric quality scores.

    Converts a String of quality scores in the given format into standard numeric quality scores.

    Definition Classes

    QualityEncoding

22.  final def toStandardNumeric(ch: Char): Byte

    Translates a character/ascii-encoded quality to a numeric quality in standard phred scaling.

    Translates a character/ascii-encoded quality to a numeric quality in standard phred scaling.

    Definition Classes

    QualityEncoding

    Annotations

    @inline()

23.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

24.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

25.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )