Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  val MaxValue: PhredScore

   The maximum Phred Value.

5.  val MinValue: PhredScore
6.  val Precision: Double

   The precision to use when converting to an Integer.

7.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

8.  def cap(score: Int): PhredScore

   Caps the scores to the range MinValue..MaxValue.

9.  def cap(score: PhredScore): PhredScore

   Caps the scores to the range MinValue..MaxValue.

10.  def clone(): AnyRef

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

11.  final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

12.  def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

13.  def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

14.  def fromLinearProbability(p: Double): PhredScore

    Converts a linear (i.e.

    Converts a linear (i.e. non-log) probability to a phred score.

15.  def fromLogProbability(lnProbError: LogProbability): PhredScore

    Converts a probability (log-space) to a phred score.

16.  final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

17.  def hashCode(): Int

    Definition Classes

    AnyRef → Any

18.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

19.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

20.  final def notify(): Unit

    Definition Classes

    AnyRef

21.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

22.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

23.  def toFastq(score: PhredScore): Byte

    Converts a numeric phred score to a one-byte character with a +33 offset.

24.  def toString(): String

    Definition Classes

    AnyRef → Any

25.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

26.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

27.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )