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com.fulcrumgenomics.util

NumericTypes

object NumericTypes

Container object for a set of numeric types for working with common probability scalings.

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Type Members

  1. type LogProbability = Double

    A type representing a natural log value of a probability.

  2. type PhredScore = Byte

    A numeric type representing a -10 * log(10) scaled probability of error.

Value Members

  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  4. val LnEight: Double
  5. val LnFive: Double
  6. val LnFour: Double
  7. val LnNine: Double
  8. val LnOne: Double
  9. val LnSeven: Double
  10. val LnSix: Double
  11. val LnTen: Double
  12. val LnThree: Double
  13. val LnTwo: Double
  14. val LnZero: Double
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  22. final def isInstanceOf[T0]: Boolean
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  23. final def ne(arg0: AnyRef): Boolean
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  30. final def wait(arg0: Long): Unit
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  31. object LogProbability

    Provides a set of operations for working with probabilities stored as (natural) logs.

    Provides a set of operations for working with probabilities stored as (natural) logs. Operations are named based on logical operations (e.g. probability of a 'and' b) vs. mathematical operations (a * b or a + b).

    Most operations perform bounds and argument checking to ensure that nonsensical operations (e.g. divide by zero) don't proceed silently.

  32. object PhredScore

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