htsjdk.variant.variantcontext.writer
Class BCF2FieldWriter.GTWriter

java.lang.Object
  htsjdk.variant.variantcontext.writer.BCF2FieldWriter
      htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
          htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GTWriter

Enclosing class:

BCF2FieldWriter

public static class BCF2FieldWriter.GTWriter
extends BCF2FieldWriter.GenotypesWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

BCF2FieldWriter.GTWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Method Summary

void	addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
void	start(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

numElements

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BCF2FieldWriter.GTWriter

public BCF2FieldWriter.GTWriter(VCFHeader header,
                                BCF2FieldEncoder fieldEncoder)

Method Detail

start

public void start(BCF2Encoder encoder,
                  VariantContext vc)
           throws java.io.IOException

Overrides:

start in class BCF2FieldWriter.GenotypesWriter

Throws:

java.io.IOException

addGenotype

public void addGenotype(BCF2Encoder encoder,
                        VariantContext vc,
                        Genotype g)
                 throws java.io.IOException

Overrides:

addGenotype in class BCF2FieldWriter.GenotypesWriter

Throws:

java.io.IOException