htsjdk.variant.variantcontext.writer
Class BCF2FieldWriter.GenotypesWriter

java.lang.Object
  htsjdk.variant.variantcontext.writer.BCF2FieldWriter
      htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

Direct Known Subclasses:

BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Enclosing class:

BCF2FieldWriter

public abstract static class BCF2FieldWriter.GenotypesWriter
extends BCF2FieldWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

protected

BCF2FieldWriter.GenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Method Summary

void	addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
protected int	numElements(VariantContext vc, Genotype g)
void	start(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BCF2FieldWriter.GenotypesWriter

protected BCF2FieldWriter.GenotypesWriter(VCFHeader header,
                                          BCF2FieldEncoder fieldEncoder)

Method Detail

start

public void start(BCF2Encoder encoder,
                  VariantContext vc)
           throws java.io.IOException

Overrides:

start in class BCF2FieldWriter

Throws:

java.io.IOException

addGenotype

public void addGenotype(BCF2Encoder encoder,
                        VariantContext vc,
                        Genotype g)
                 throws java.io.IOException

Throws:

java.io.IOException

numElements

protected int numElements(VariantContext vc,
                          Genotype g)