Interface | Description |
---|---|
ReadFeature |
An interface to capture data in read coordinates.
|
Class | Description |
---|---|
BaseQualityScore |
A read feature representing a single quality score in a read.
|
Bases | |
Deletion |
A read feature representing a deletion of one or more bases similar to
CigarOperator.D . |
HardClip |
A read feature representing a hard clip similar to
CigarOperator.H . |
InsertBase |
A read feature representing a single insert base.
|
Insertion |
A read feature representing a multi-base insertion.
|
Padding |
A read feature representing padding, similar to
CigarOperator.P . |
ReadBase |
A read feature representing a single base with associated quality score.
|
RefSkip |
A read feature representing a reference skip similar to
CigarOperator.N . |
Scores |
A read feature representing a contiguous stretch of quality scores in a read.
|
SoftClip |
A read feature representing a soft clip similar to
CigarOperator.S . |
Substitution |
A substitution event captured in read coordinates.
|