public class BAMIndexMetaData
extends java.lang.Object
Modifier and Type | Method and Description |
---|---|
int |
getAlignedRecordCount() |
static BAMIndexMetaData[] |
getIndexStats(BAMFileReader bam)
Prints meta-data statistics from BAM index (.bai or .csi) file
Statistics include count of aligned and unaligned reads for each reference sequence
and a count of all records with no start coordinate
|
int |
getUnalignedRecordCount() |
static void |
printIndexStats(java.io.File inputBamFile)
Prints meta-data statistics from BAM index (.bai or .csi) file
Statistics include count of aligned and unaligned reads for each reference sequence
and a count of all records with no start coordinate
|
public int getAlignedRecordCount()
public int getUnalignedRecordCount()
public static void printIndexStats(java.io.File inputBamFile)
public static BAMIndexMetaData[] getIndexStats(BAMFileReader bam)