Package htsjdk.samtools

Enum Class ValidationStringency

java.lang.Object

java.lang.Enum<ValidationStringency>

htsjdk.samtools.ValidationStringency

All Implemented Interfaces:

Serializable, Comparable<ValidationStringency>, Constable

public enum ValidationStringency
extends Enum<ValidationStringency>

How strict to be when reading a SAM or BAM, beyond bare minimum validation.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
LENIENT	Emit warnings but keep going if possible.
SILENT	Like LENIENT, only don't emit warning messages.
STRICT	Do the right thing, throw an exception if something looks wrong.

Field Summary

Fields

Modifier and Type	Field	Description
static final ValidationStringency	DEFAULT_STRINGENCY

Method Summary

Modifier and Type	Method	Description
static ValidationStringency	valueOf(String name)	Returns the enum constant of this class with the specified name.
static ValidationStringency[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

STRICT

public static final ValidationStringency STRICT

Do the right thing, throw an exception if something looks wrong.

LENIENT

public static final ValidationStringency LENIENT

Emit warnings but keep going if possible.

SILENT

public static final ValidationStringency SILENT

Like LENIENT, only don't emit warning messages.

Field Details

DEFAULT_STRINGENCY

public static final ValidationStringency DEFAULT_STRINGENCY

Method Details

values

public static ValidationStringency[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static ValidationStringency valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null