Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
2L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
2L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
INFO_EFFECT |
"variant effect (UTR5,UTR3,intronic,splicing,missense,stoploss,stopgain,startloss,duplication,frameshift-insertion,frameshift-deletion,non-frameshift-deletion,non-frameshift-insertion,synonymous)" |
public static final String |
INFO_HGVS |
"HGVS Nomenclature" |
public static final String |
VCF_ANN_DESCRIPTION_STRING |
"Functional annotations:\'Allele|Annotation|Annotation_Impact|Gene_Name|Gene_ID|Feature_Type|Feature_ID|Transcript_BioType|Rank|HGVS.c|HGVS.p|cDNA.pos / cDNA.length|CDS.pos / CDS.length|AA.pos / AA.length|Distance|ERRORS / WARNINGS / INFO\'" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
2L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
INVALID_RANK |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final String |
DOWNLOAD_URL |
"ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
2L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NO_CALL |
-1 |
public static final int |
REF_CALL |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
2L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final long |
serialVersionUID |
1L |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
INVALID_EXON_ID |
-1 |
public static final int |
INVALID_INTRON_ID |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
LONGEST_TRANSCRIPT |
7 |
public static final int |
LOW_PRIORITY |
8 |
public static final int |
NOT_AVAILABLE |
-1 |
public static final int |
TSL1 |
1 |
public static final int |
TSL2 |
2 |
public static final int |
TSL3 |
3 |
public static final int |
TSL4 |
4 |
public static final int |
TSL5 |
5 |
public static final int |
UCSC_CANONICAL |
6 |
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