public class AnnotationLocation extends Object
Modifier and Type | Class and Description |
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static class |
AnnotationLocation.RankType
Enumeration for rank types, exon, intron, or neither (i.e.
|
Modifier and Type | Field and Description |
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static int |
INVALID_RANK
Sentinel value for "invalid rank".
|
Constructor and Description |
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AnnotationLocation(TranscriptModel transcript,
AnnotationLocation.RankType rankType,
int rank,
int totalRank,
TranscriptInterval txLocation) |
Modifier and Type | Method and Description |
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boolean |
equals(Object obj) |
int |
getRank() |
AnnotationLocation.RankType |
getRankType() |
int |
getTotalRank() |
TranscriptModel |
getTranscript() |
TranscriptInterval |
getTXLocation() |
int |
hashCode() |
String |
toHGVSChunk() |
public static final int INVALID_RANK
public AnnotationLocation(TranscriptModel transcript, AnnotationLocation.RankType rankType, int rank, int totalRank, TranscriptInterval txLocation)
public TranscriptModel getTranscript()
public AnnotationLocation.RankType getRankType()
public int getRank()
public int getTotalRank()
public TranscriptInterval getTXLocation()
public String toHGVSChunk()
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