net.maizegenetics.pangenome.db_loading

Class LoadHaplotypesFromGVCFPlugin.ChromosomeGVCFRecord

net.maizegenetics.pangenome.db_loading.LoadHaplotypesFromGVCFPlugin.ChromosomeGVCFRecord

Enclosing class:

LoadHaplotypesFromGVCFPlugin

public static class LoadHaplotypesFromGVCFPlugin.ChromosomeGVCFRecord

Constructor Detail

ChromosomeGVCFRecord

public ChromosomeGVCFRecord(@NotNull
                            java.lang.String currentChrom,
                            @NotNull
                            java.lang.String currentTaxon,
                            int gameteId,
                            @NotNull
                            java.util.Map<java.lang.Integer,? extends net.maizegenetics.pangenome.db_loading.AnchorDataPHG> anchorDataMapping,
                            @NotNull
                            GenoHaploData ghd,
                            @NotNull
                            java.lang.String asmServerPath,
                            @NotNull
                            java.lang.String asmLocalPath,
                            @NotNull
                            java.lang.String gvcfServerPath,
                            @NotNull
                            java.lang.String localGVCFFile)

Method Detail

getCurrentChrom

@NotNull
public java.lang.String getCurrentChrom()

getCurrentTaxon

@NotNull
public java.lang.String getCurrentTaxon()

getGameteId

public int getGameteId()

getAnchorDataMapping

@NotNull
public java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.db_loading.AnchorDataPHG> getAnchorDataMapping()

getGhd

@NotNull
public GenoHaploData getGhd()

getAsmServerPath

@NotNull
public java.lang.String getAsmServerPath()

getAsmLocalPath

@NotNull
public java.lang.String getAsmLocalPath()

getGvcfServerPath

@NotNull
public java.lang.String getGvcfServerPath()

getLocalGVCFFile

@NotNull
public java.lang.String getLocalGVCFFile()

component1

@NotNull
public java.lang.String component1()

component2

@NotNull
public java.lang.String component2()

component3

public int component3()

component4

@NotNull
public java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.db_loading.AnchorDataPHG> component4()

component5

@NotNull
public GenoHaploData component5()

component6

@NotNull
public java.lang.String component6()

component7

@NotNull
public java.lang.String component7()

component8

@NotNull
public java.lang.String component8()

component9

@NotNull
public java.lang.String component9()

copy

@NotNull
public net.maizegenetics.pangenome.db_loading.LoadHaplotypesFromGVCFPlugin.ChromosomeGVCFRecord copy(@NotNull
                                                                                                              java.lang.String currentChrom,
                                                                                                              @NotNull
                                                                                                              java.lang.String currentTaxon,
                                                                                                              int gameteId,
                                                                                                              @NotNull
                                                                                                              java.util.Map<java.lang.Integer,? extends net.maizegenetics.pangenome.db_loading.AnchorDataPHG> anchorDataMapping,
                                                                                                              @NotNull
                                                                                                              GenoHaploData ghd,
                                                                                                              @NotNull
                                                                                                              java.lang.String asmServerPath,
                                                                                                              @NotNull
                                                                                                              java.lang.String asmLocalPath,
                                                                                                              @NotNull
                                                                                                              java.lang.String gvcfServerPath,
                                                                                                              @NotNull
                                                                                                              java.lang.String localGVCFFile)

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)