net.maizegenetics.pangenome.db_loading

Class VCFFile

net.maizegenetics.pangenome.db_loading.VCFFile

public class VCFFile

Method Detail

vcfFileReader

@Synchronized
 @Nullable
public static htsjdk.variant.vcf.VCFFileReader vcfFileReader(@NotNull
                                                                                      java.lang.String vcfFile,
                                                                                      @Nullable
                                                                                      htsjdk.variant.vcf.VCFFileReader readerReturned)

Gets a VCFFileReader for the given file. If the file is already open, it will return the existing reader. readerReturned is used to return it to the cache for use by other threads.