net.maizegenetics.pangenome.hapCalling

Class BestHaplotypePathPlugin.PathFindingResult

net.maizegenetics.pangenome.hapCalling.BestHaplotypePathPlugin.PathFindingResult

Enclosing class:

BestHaplotypePathPlugin

public static class BestHaplotypePathPlugin.PathFindingResult

Constructor Detail

PathFindingResult

public PathFindingResult(@NotNull
                         java.util.List<java.lang.String> keyFileEntry,
                         @NotNull
                         java.util.List<? extends net.maizegenetics.pangenome.api.HaplotypeNode> path,
                         @NotNull
                         java.util.List<kotlin.Pair> likelyParents,
                         int totalReads)

Method Detail

getKeyFileEntry

@NotNull
public java.util.List<java.lang.String> getKeyFileEntry()

getPath

@NotNull
public java.util.List<net.maizegenetics.pangenome.api.HaplotypeNode> getPath()

getLikelyParents

@NotNull
public java.util.List<kotlin.Pair> getLikelyParents()

getTotalReads

public int getTotalReads()

component1

@NotNull
public java.util.List<java.lang.String> component1()

component2

@NotNull
public java.util.List<net.maizegenetics.pangenome.api.HaplotypeNode> component2()

component3

@NotNull
public java.util.List<kotlin.Pair> component3()

component4

public int component4()

copy

@NotNull
public net.maizegenetics.pangenome.hapCalling.BestHaplotypePathPlugin.PathFindingResult copy(@NotNull
                                                                                                      java.util.List<java.lang.String> keyFileEntry,
                                                                                                      @NotNull
                                                                                                      java.util.List<? extends net.maizegenetics.pangenome.api.HaplotypeNode> path,
                                                                                                      @NotNull
                                                                                                      java.util.List<kotlin.Pair> likelyParents,
                                                                                                      int totalReads)

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)