net.maizegenetics.pangenome.hapCalling

Class MultisampleBAMToMappingPlugin.ReadMappingResult

net.maizegenetics.pangenome.hapCalling.MultisampleBAMToMappingPlugin.ReadMappingResult

Enclosing class:

MultisampleBAMToMappingPlugin

public static class MultisampleBAMToMappingPlugin.ReadMappingResult

Constructor Detail

ReadMappingResult

public ReadMappingResult(@NotNull
                         KeyFileUniqueRecord keyFileRecord,
                         @NotNull
                         HapIdMultiset hapIdMultiset,
                         @NotNull
                         java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.hapCalling.HapIdStats> hapIdToStatMap)

Method Detail

getKeyFileRecord

@NotNull
public KeyFileUniqueRecord getKeyFileRecord()

getHapIdMultiset

@NotNull
public HapIdMultiset getHapIdMultiset()

getHapIdToStatMap

@NotNull
public java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.hapCalling.HapIdStats> getHapIdToStatMap()

component1

@NotNull
public KeyFileUniqueRecord component1()

component2

@NotNull
public HapIdMultiset component2()

component3

@NotNull
public java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.hapCalling.HapIdStats> component3()

copy

@NotNull
public net.maizegenetics.pangenome.hapCalling.MultisampleBAMToMappingPlugin.ReadMappingResult copy(@NotNull
                                                                                                            KeyFileUniqueRecord keyFileRecord,
                                                                                                            @NotNull
                                                                                                            HapIdMultiset hapIdMultiset,
                                                                                                            @NotNull
                                                                                                            java.util.Map<java.lang.Integer,net.maizegenetics.pangenome.hapCalling.HapIdStats> hapIdToStatMap)

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)