net.maizegenetics.pangenome.hapCalling

Class PositionToRefAndAltHaplotypes

net.maizegenetics.pangenome.hapCalling.PositionToRefAndAltHaplotypes

public class PositionToRefAndAltHaplotypes

Constructor Detail

PositionToRefAndAltHaplotypes

public PositionToRefAndAltHaplotypes()

Method Detail

getPositionToRefAndAltIdsMap

@NotNull
public NonExistentClass getPositionToRefAndAltIdsMap()

setPositionToRefAndAltIdsMap

public void setPositionToRefAndAltIdsMap(@NotNull
                                         NonExistentClass p)

addToRef

public void addToRef(@NotNull
                     net.maizegenetics.dna.map.Position position,
                     int hapIdInt)

addToAlt

public void addToAlt(@NotNull
                     net.maizegenetics.dna.map.Position position,
                     int hapIdInt)

getHapIdsForPos

@NotNull
public kotlin.Pair<java.util.List,java.util.List> getHapIdsForPos(@NotNull
                                                                           net.maizegenetics.dna.map.Position position)

getMap

@NotNull
public java.util.Map<net.maizegenetics.dna.map.Position,kotlin.Pair> getMap()

addAll

public void addAll(@NotNull
                   PositionToRefAndAltHaplotypes otherMap)