net.maizegenetics.pangenome.hapCalling

Class RefRangeWrapper

net.maizegenetics.pangenome.hapCalling.RefRangeWrapper

public class RefRangeWrapper

Need a ReferenceRange Wrapper function as the Current ReferenceRange is not serializable due to the Chromosome object.

Constructor Detail

RefRangeWrapper

public RefRangeWrapper(@NotNull
                       java.lang.String myReferenceName,
                       @NotNull
                       java.lang.String myChromosome,
                       int myStart,
                       int myEnd,
                       int myID,
                       @NotNull
                       java.util.Set<java.lang.String> myMethods)

Need a ReferenceRange Wrapper function as the Current ReferenceRange is not serializable due to the Chromosome object.

Method Detail

getMyReferenceName

@NotNull
public java.lang.String getMyReferenceName()

getMyChromosome

@NotNull
public java.lang.String getMyChromosome()

getMyStart

public int getMyStart()

getMyEnd

public int getMyEnd()

getMyID

public int getMyID()

getMyMethods

@NotNull
public java.util.Set<java.lang.String> getMyMethods()

component1

@NotNull
public java.lang.String component1()

component2

@NotNull
public java.lang.String component2()

component3

public int component3()

component4

public int component4()

component5

public int component5()

component6

@NotNull
public java.util.Set<java.lang.String> component6()

copy

@NotNull
public RefRangeWrapper copy(@NotNull
                                     java.lang.String myReferenceName,
                                     @NotNull
                                     java.lang.String myChromosome,
                                     int myStart,
                                     int myEnd,
                                     int myID,
                                     @NotNull
                                     java.util.Set<java.lang.String> myMethods)

Need a ReferenceRange Wrapper function as the Current ReferenceRange is not serializable due to the Chromosome object.

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)