VCFMetricsPlugin.IndelDistributions

net.maizegenetics.pangenome.hapCalling.VCFMetricsPlugin.IndelDistributions

Enclosing class:

VCFMetricsPlugin
```
public static class VCFMetricsPlugin.IndelDistributions
```
Data class containing summary information about indel distribution (number of insertions/deletions, average sizes, etc.) toString() is overridden in order to make printing to tab-delimited summary file easier

Constructor Detail

IndelDistributions

public IndelDistributions(int numIndels,
                          double meanIndel,
                          double indelLowerQuartile,
                          double indelMedian,
                          double indelUpperQuartile,
                          int indelLargest,
                          int numIns,
                          double meanIns,
                          double insLowerQuartile,
                          double insMedian,
                          double insUpperQuartile,
                          int insLargest,
                          int numDel,
                          double meanDel,
                          double delLowerQuartile,
                          double delMedian,
                          double delUpperQuartile,
                          int delLargest)

Data class containing summary information about indel distribution (number of insertions/deletions, average sizes, etc.) toString() is overridden in order to make printing to tab-delimited summary file easier

Method Detail

toString

@NotNull
public java.lang.String toString()

getNumIndels
```
public int getNumIndels()
```

getMeanIndel
```
public double getMeanIndel()
```

getIndelLowerQuartile
```
public double getIndelLowerQuartile()
```

getIndelMedian
```
public double getIndelMedian()
```

getIndelUpperQuartile
```
public double getIndelUpperQuartile()
```

getIndelLargest
```
public int getIndelLargest()
```

getNumIns
```
public int getNumIns()
```

getMeanIns
```
public double getMeanIns()
```

getInsLowerQuartile
```
public double getInsLowerQuartile()
```

getInsMedian
```
public double getInsMedian()
```

getInsUpperQuartile
```
public double getInsUpperQuartile()
```

getInsLargest
```
public int getInsLargest()
```

getNumDel
```
public int getNumDel()
```

getMeanDel
```
public double getMeanDel()
```

getDelLowerQuartile
```
public double getDelLowerQuartile()
```

getDelMedian
```
public double getDelMedian()
```

getDelUpperQuartile
```
public double getDelUpperQuartile()
```

getDelLargest
```
public int getDelLargest()
```

component1
```
public int component1()
```

component2
```
public double component2()
```

component3
```
public double component3()
```

component4
```
public double component4()
```

component5
```
public double component5()
```

component6
```
public int component6()
```

component7
```
public int component7()
```

component8
```
public double component8()
```

component9
```
public double component9()
```

component10
```
public double component10()
```

component11
```
public double component11()
```

component12
```
public int component12()
```

component13
```
public int component13()
```

component14
```
public double component14()
```

component15
```
public double component15()
```

component16
```
public double component16()
```

component17
```
public double component17()
```

component18
```
public int component18()
```

copy

@NotNull
public net.maizegenetics.pangenome.hapCalling.VCFMetricsPlugin.IndelDistributions copy(int numIndels,
                                                                                                double meanIndel,
                                                                                                double indelLowerQuartile,
                                                                                                double indelMedian,
                                                                                                double indelUpperQuartile,
                                                                                                int indelLargest,
                                                                                                int numIns,
                                                                                                double meanIns,
                                                                                                double insLowerQuartile,
                                                                                                double insMedian,
                                                                                                double insUpperQuartile,
                                                                                                int insLargest,
                                                                                                int numDel,
                                                                                                double meanDel,
                                                                                                double delLowerQuartile,
                                                                                                double delMedian,
                                                                                                double delUpperQuartile,
                                                                                                int delLargest)

hashCode
```
public int hashCode()
```

equals

public boolean equals(@Nullable
                      java.lang.Object p)

Class VCFMetricsPlugin.IndelDistributions

Constructor Detail

IndelDistributions

Method Detail

toString

getNumIndels

getMeanIndel

getIndelLowerQuartile

getIndelMedian

getIndelUpperQuartile

getIndelLargest

getNumIns

getMeanIns

getInsLowerQuartile

getInsMedian

getInsUpperQuartile

getInsLargest

getNumDel

getMeanDel

getDelLowerQuartile

getDelMedian

getDelUpperQuartile

getDelLargest

component1

component2

component3

component4

component5

component6

component7

component8

component9

component10

component11

component12

component13

component14

component15

component16

component17

component18

copy

hashCode

equals