net.maizegenetics.pangenome.processAssemblyGenomes

Class AssemblyMAFFromAnchorWavePlugin.InputChannelData

net.maizegenetics.pangenome.processAssemblyGenomes.AssemblyMAFFromAnchorWavePlugin.InputChannelData

Enclosing class:

AssemblyMAFFromAnchorWavePlugin

public static class AssemblyMAFFromAnchorWavePlugin.InputChannelData

Constructor Detail

InputChannelData

public InputChannelData(@NotNull
                        java.lang.String refFasta,
                        @NotNull
                        java.lang.String asmFasta,
                        @NotNull
                        java.lang.String asmDBName,
                        @NotNull
                        java.lang.String outputDir,
                        @NotNull
                        java.lang.String gffFile,
                        @NotNull
                        java.lang.String refSamOutFile)

Method Detail

getRefFasta

@NotNull
public java.lang.String getRefFasta()

getAsmFasta

@NotNull
public java.lang.String getAsmFasta()

getAsmDBName

@NotNull
public java.lang.String getAsmDBName()

getOutputDir

@NotNull
public java.lang.String getOutputDir()

getGffFile

@NotNull
public java.lang.String getGffFile()

getRefSamOutFile

@NotNull
public java.lang.String getRefSamOutFile()

component1

@NotNull
public java.lang.String component1()

component2

@NotNull
public java.lang.String component2()

component3

@NotNull
public java.lang.String component3()

component4

@NotNull
public java.lang.String component4()

component5

@NotNull
public java.lang.String component5()

component6

@NotNull
public java.lang.String component6()

copy

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.AssemblyMAFFromAnchorWavePlugin.InputChannelData copy(@NotNull
                                                                                                                         java.lang.String refFasta,
                                                                                                                         @NotNull
                                                                                                                         java.lang.String asmFasta,
                                                                                                                         @NotNull
                                                                                                                         java.lang.String asmDBName,
                                                                                                                         @NotNull
                                                                                                                         java.lang.String outputDir,
                                                                                                                         @NotNull
                                                                                                                         java.lang.String gffFile,
                                                                                                                         @NotNull
                                                                                                                         java.lang.String refSamOutFile)

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)