net.maizegenetics.pangenome.processAssemblyGenomes

Class MAFToGVCFPlugin.MAFRecord

net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.MAFRecord

Enclosing class:

MAFToGVCFPlugin

public static class MAFToGVCFPlugin.MAFRecord

Constructor Detail

MAFRecord

public MAFRecord(double score,
                 @NotNull
                 net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock refRecord,
                 @NotNull
                 net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock altRecord)

Method Detail

getScore

public double getScore()

getRefRecord

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock getRefRecord()

getAltRecord

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock getAltRecord()

component1

public double component1()

component2

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock component2()

component3

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock component3()

copy

@NotNull
public net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.MAFRecord copy(double score,
                                                                                                  @NotNull
                                                                                                  net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock refRecord,
                                                                                                  @NotNull
                                                                                                  net.maizegenetics.pangenome.processAssemblyGenomes.MAFToGVCFPlugin.AlignmentBlock altRecord)

toString

@NotNull
public java.lang.String toString()

hashCode

public int hashCode()

equals

public boolean equals(@Nullable
                      java.lang.Object p)