defaultCommandGroups
ADAMMain
deferMerging
TransformAlignmentsArgs TransformFragmentsArgs TransformGenotypesArgs TransformVariantsArgs ViewArgs
disableFastConcat
Reads2CoverageArgs TransformAlignmentsArgs TransformFeaturesArgs TransformFragmentsArgs TransformGenotypesArgs TransformVariantsArgs ViewArgs
disableProcessingStep
TransformAlignmentsArgs
disableProjection
ADAM2FastqArgs
displayRaw
PrintADAM