onlyNegativeStrands
Reads2CoverageArgs
onlyPositiveStrands
Reads2CoverageArgs
org
root
outputFile
PrintADAMArgs
outputOriginalBaseQualities
ADAM2FastqArgs
outputPath
ADAM2FastaArgs
ADAM2FastqArgs
CountContigKmersArgs
CountReadKmersArgs
Fasta2ADAMArgs
FlagStatArgs
MergeShardsArgs
Reads2CoverageArgs
TransformAlignmentsArgs
TransformFeaturesArgs
TransformFragmentsArgs
TransformGenotypesArgs
TransformVariantsArgs
ViewArgs
outputPath2
ADAM2FastqArgs
outputPathArg
ViewArgs