o

org.bdgenomics.adam.models

OptionalRegionOrdering

object OptionalRegionOrdering extends OptionalReferenceOrdering[ReferenceRegion]

A sort order that orders all given regions lexicographically by reference and numerically within a single reference sequence, and puts all non-provided regions at the end. An extension of PositionOrdering to Optional data.

See also

PositionOrdering

Linear Supertypes
OptionalReferenceOrdering[ReferenceRegion], Ordering[Option[ReferenceRegion]], PartialOrdering[Option[ReferenceRegion]], Equiv[Option[ReferenceRegion]], Serializable, Serializable, Comparator[Option[ReferenceRegion]], AnyRef, Any
Ordering
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Inherited
  1. OptionalRegionOrdering
  2. OptionalReferenceOrdering
  3. Ordering
  4. PartialOrdering
  5. Equiv
  6. Serializable
  7. Serializable
  8. Comparator
  9. AnyRef
  10. Any
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Visibility
  1. Public
  2. All

Type Members

  1. class Ops extends AnyRef
    Definition Classes
    Ordering

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. val baseOrdering: RegionOrdering.type
    Definition Classes
    OptionalRegionOrdering → OptionalReferenceOrdering
  6. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  7. def compare(a: Option[ReferenceRegion], b: Option[ReferenceRegion]): Int
    Definition Classes
    OptionalReferenceOrdering → Ordering → Comparator
  8. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  10. def equiv(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean
    Definition Classes
    Ordering → PartialOrdering → Equiv
  11. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. def gt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean
    Definition Classes
    Ordering → PartialOrdering
  14. def gteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean
    Definition Classes
    Ordering → PartialOrdering
  15. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  16. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  17. def lt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean
    Definition Classes
    Ordering → PartialOrdering
  18. def lteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean
    Definition Classes
    Ordering → PartialOrdering
  19. def max(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]
    Definition Classes
    Ordering
  20. def min(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]
    Definition Classes
    Ordering
  21. implicit def mkOrderingOps(lhs: Option[ReferenceRegion]): Ops
    Definition Classes
    Ordering
  22. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  23. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  24. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  25. def on[U](f: (U) ⇒ Option[ReferenceRegion]): Ordering[U]
    Definition Classes
    Ordering
  26. def reverse: Ordering[Option[ReferenceRegion]]
    Definition Classes
    Ordering → PartialOrdering
  27. def reversed(): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  28. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  29. def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: Option[ReferenceRegion], _ <: U]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  30. def thenComparing[U](arg0: Function[_ >: Option[ReferenceRegion], _ <: U], arg1: Comparator[_ >: U]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  31. def thenComparing(arg0: Comparator[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  32. def thenComparingDouble(arg0: ToDoubleFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  33. def thenComparingInt(arg0: ToIntFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  34. def thenComparingLong(arg0: ToLongFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]
    Definition Classes
    Comparator
  35. def toString(): String
    Definition Classes
    AnyRef → Any
  36. def tryCompare(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Some[Int]
    Definition Classes
    Ordering → PartialOrdering
  37. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from OptionalReferenceOrdering[ReferenceRegion]

Inherited from Ordering[Option[ReferenceRegion]]

Inherited from PartialOrdering[Option[ReferenceRegion]]

Inherited from Equiv[Option[ReferenceRegion]]

Inherited from Serializable

Inherited from Serializable

Inherited from Comparator[Option[ReferenceRegion]]

Inherited from AnyRef

Inherited from Any

Ungrouped