Value Members

1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  def apply(v: Variant, genotypes: Iterable[Genotype]): VariantContext

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   v

   Variant which is used to construct the ReferencePosition

   genotypes

   Seq[Genotype]

   returns

   VariantContext corresponding to the Variant

5.  def apply(v: Variant): VariantContext

   Constructs an VariantContext from an Variant

   Constructs an VariantContext from an Variant

   v

   Variant which is used to construct the ReferencePosition

   returns

   VariantContext corresponding to the Variant

6.  final def asInstanceOf[T0]: T0

   Definition Classes

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7.  def buildFromGenotypes(genotypes: Seq[Genotype]): VariantContext

   Builds a variant context off of a set of genotypes.

   Builds a variant context off of a set of genotypes. Builds variants from the genotypes.

   genotypes

   List of genotypes to build variant context from.

   returns

   A variant context corresponding to the variants and genotypes at this site.

   Note

   Genotypes must be at the same position.

8.  def clone(): AnyRef

   Attributes

   protected[java.lang]

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9.  final def eq(arg0: AnyRef): Boolean

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10.  def equals(arg0: Any): Boolean

    Definition Classes

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11.  def finalize(): Unit

    Attributes

    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

12.  final def getClass(): Class[_]

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    @native()

13.  def hashCode(): Int

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    @native()

14.  final def isInstanceOf[T0]: Boolean

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15.  final def ne(arg0: AnyRef): Boolean

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16.  final def notify(): Unit

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    @native()

17.  final def notifyAll(): Unit

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    @native()

18.  final def synchronized[T0](arg0: ⇒ T0): T0

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19.  def toString(): String

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20.  final def wait(): Unit

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    @throws( ... )

21.  final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

22.  final def wait(arg0: Long): Unit

    Definition Classes

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    @native() @throws( ... )