c

org.bdgenomics.adam.rdd.feature

BEDOutFormatter

case class BEDOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming BED format.

stringency

Validation stringency. Defaults to ValidationStringency.STRICT.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Inherited
  1. BEDOutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new BEDOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT)

    stringency

    Validation stringency. Defaults to ValidationStringency.STRICT.

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. val bedParser: BEDParser
  6. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  11. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  12. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  13. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. def read(is: InputStream): Iterator[Feature]

    Reads features from an input stream in BED format.

    Reads features from an input stream in BED format.

    is

    An InputStream connected to the process we are piping from.

    returns

    Returns an iterator of Features read from the stream.

    Definition Classes
    BEDOutFormatterOutFormatter
  15. val stringency: ValidationStringency
  16. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  17. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[Feature]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped