c

org.bdgenomics.adam.rdd.feature

NarrowPeakOutFormatter

case class NarrowPeakOutFormatter() extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming NarrowPeak format.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Inherited
  1. NarrowPeakOutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new NarrowPeakOutFormatter()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  8. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  9. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  10. val narrowPeakParser: NarrowPeakParser
  11. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  12. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  13. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. def read(is: InputStream): Iterator[Feature]

    Reads features from an input stream in NarrowPeak format.

    Reads features from an input stream in NarrowPeak format.

    is

    An InputStream connected to the process we are piping from.

    returns

    Returns an iterator of Features read from the stream.

    Definition Classes
    NarrowPeakOutFormatter → OutFormatter
  15. val stringency: ValidationStringency
  16. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  17. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[Feature]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped