org.bdgenomics.adam.rdd.read.realignment
Order two indel realignment targets by earlier starting position.
Order two indel realignment targets by earlier starting position.
Indel realignment target to compare.
Indel realignment target to compare.
Comparison done by starting position.
Check to see if an indel realignment target contains the given read.
Check to see if an indel realignment target contains the given read.
Realignment target to compare.
Read to compare.
True if read alignment is contained in target span.
Compares a read to an indel realignment target to see if it starts before the start of the indel realignment target.
Compares a read to an indel realignment target to see if it starts before the start of the indel realignment target.
Realignment target to compare.
Read to compare.
True if start of read is before the start of the indel alignment target.
Compares two indel realignment targets to see if they overlap.
Compares two indel realignment targets to see if they overlap.
Indel realignment target to compare.
Indel realignment target to compare.
True if two targets overlap.