org.broadinstitute.hellbender.engine.filters

Class ReadFilterLibrary.NonZeroFragmentLengthReadFilter

java.lang.Object

org.broadinstitute.hellbender.engine.filters.ReadFilter

org.broadinstitute.hellbender.engine.filters.ReadFilterLibrary.NonZeroFragmentLengthReadFilter

All Implemented Interfaces:

java.io.Serializable, java.util.function.Predicate<GATKRead>

Enclosing class:

ReadFilterLibrary

@DocumentedFeature(groupName="Read Filters",
                   groupSummary="Applied by engine to select reads for analysis",
                   summary="Filter out reads with fragment length different from zero")
public static class ReadFilterLibrary.NonZeroFragmentLengthReadFilter
extends ReadFilter

Filter out reads with fragment length (insert size) different from zero.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

ReadFilter.ReadFilterAnd, ReadFilter.ReadFilterBinOp

Field Summary

Fields inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

samHeader

Constructor Summary

Constructors

Constructor and Description
NonZeroFragmentLengthReadFilter()

Method Summary

Modifier and Type	Method and Description
boolean	test(GATKRead read)

Methods inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

and, fromList, negate, or, setHeader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.function.Predicate

and, isEqual, or

Constructor Detail

NonZeroFragmentLengthReadFilter

public NonZeroFragmentLengthReadFilter()

Method Detail

test

public boolean test(GATKRead read)

Specified by:

test in interface java.util.function.Predicate<GATKRead>

Specified by:

test in class ReadFilter