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Hierarchy For Package org.broadinstitute.hellbender.engine.filters
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.engine.filters.
CountingVariantFilter
(implements org.broadinstitute.hellbender.engine.filters.
VariantFilter
)
org.broadinstitute.hellbender.engine.filters.
CountingVariantFilter.CountingAndVariantFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilter
(implements java.util.function.Predicate<T>, java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
AlignmentAgreesWithHeaderReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
AmbiguousBaseReadFilter
org.broadinstitute.hellbender.engine.filters.
CountingReadFilter
org.broadinstitute.hellbender.engine.filters.
CountingReadFilter.CountingAndReadFilter
org.broadinstitute.hellbender.engine.filters.
FragmentLengthReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
LibraryReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
MappingQualityReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
MetricsReadFilter
org.broadinstitute.hellbender.engine.filters.
NotOpticalDuplicateReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
OverclippedReadFilter
org.broadinstitute.hellbender.engine.filters.
PlatformReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
PlatformUnitReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
ReadFilter.ReadFilterBinOp
org.broadinstitute.hellbender.engine.filters.
ReadFilter.ReadFilterAnd
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.AllowAllReadsReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.CigarContainsNoNOperator
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.FirstOfPairReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.GoodCigarReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.HasReadGroupReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MappedReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MappingQualityAvailableReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MappingQualityNotZeroReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MatchingBasesAndQualsReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MateDifferentStrandReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.MateOnSameContigOrNoMappedMateReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.NonZeroFragmentLengthReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.NonZeroReferenceLengthAlignmentReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.NotDuplicateReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.NotSecondaryAlignmentReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.NotSupplementaryAlignmentReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.PairedReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.PassesVendorQualityCheckReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.PrimaryLineReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.ProperlyPairedReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.ReadLengthEqualsCigarLengthReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.SecondOfPairReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.SeqIsStoredReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.ValidAlignmentEndReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary.ValidAlignmentStartReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadGroupBlackListReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
ReadGroupReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
ReadLengthReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
ReadNameReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
ReadStrandFilter
org.broadinstitute.hellbender.engine.filters.
SampleReadFilter
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.filters.
WellformedReadFilter
org.broadinstitute.hellbender.engine.filters.
ReadFilterLibrary
org.broadinstitute.hellbender.engine.filters.
VariantFilterLibrary
org.broadinstitute.hellbender.engine.filters.
VariantIDsVariantFilter
(implements org.broadinstitute.hellbender.engine.filters.
VariantFilter
)
org.broadinstitute.hellbender.engine.filters.
VariantTypesVariantFilter
(implements org.broadinstitute.hellbender.engine.filters.
VariantFilter
)
Interface Hierarchy
java.util.function.Predicate<T>
org.broadinstitute.hellbender.engine.filters.
VariantFilter
(also extends java.io.Serializable)
java.io.Serializable
org.broadinstitute.hellbender.engine.filters.
VariantFilter
(also extends java.util.function.Predicate<T>)
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