org.broadinstitute.hellbender.engine.filters

Class ReadFilterLibrary.PairedReadFilter

java.lang.Object

org.broadinstitute.hellbender.engine.filters.ReadFilter

org.broadinstitute.hellbender.engine.filters.ReadFilterLibrary.PairedReadFilter

All Implemented Interfaces:

java.io.Serializable, java.util.function.Predicate<GATKRead>

Enclosing class:

ReadFilterLibrary

@DocumentedFeature(groupName="Read Filters",
                   groupSummary="Applied by engine to select reads for analysis",
                   summary="Filter out unpaired reads")
public static class ReadFilterLibrary.PairedReadFilter
extends ReadFilter

Filter out unpaired reads (not 0x1).

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

ReadFilter.ReadFilterAnd, ReadFilter.ReadFilterBinOp

Field Summary

Fields inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

samHeader

Constructor Summary

Constructors

Constructor and Description
PairedReadFilter()

Method Summary

Modifier and Type	Method and Description
boolean	test(GATKRead read)

Methods inherited from class org.broadinstitute.hellbender.engine.filters.ReadFilter

and, fromList, negate, or, setHeader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.function.Predicate

and, isEqual, or

Constructor Detail

PairedReadFilter

public PairedReadFilter()

Method Detail

test

public boolean test(GATKRead read)

Specified by:

test in interface java.util.function.Predicate<GATKRead>

Specified by:

test in class ReadFilter