org.broadinstitute.hellbender.tools.copynumber.formats.collections

Class HDF5SimpleCountCollection

java.lang.Object

org.broadinstitute.hellbender.tools.copynumber.formats.collections.HDF5SimpleCountCollection

public final class HDF5SimpleCountCollection
extends java.lang.Object

Helper class for SimpleCountCollection used to read/write HDF5. Class is only visible so that it can be referenced in documentation.

Data is stored in the following HDF5 paths:

• sample name: /sample_metadata/sample_name
• sequence dictionary: /locatable_metadata/sequence_dictionary
• intervals: /intervals
• counts: /counts/values

See HDF5Utils.writeIntervals(org.broadinstitute.hdf5.HDF5File, java.lang.String, java.util.List<T>) for details on the representation of intervals.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait