org.broadinstitute.hellbender.tools.copynumber.formats.collections

Class IntegerCopyNumberSegmentCollection

java.lang.Object

org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractRecordCollection<METADATA,RECORD>

org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractLocatableCollection<SampleLocatableMetadata,RECORD>

org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractSampleLocatableCollection<IntegerCopyNumberSegment>

org.broadinstitute.hellbender.tools.copynumber.formats.collections.IntegerCopyNumberSegmentCollection

public final class IntegerCopyNumberSegmentCollection
extends AbstractSampleLocatableCollection<IntegerCopyNumberSegment>

Represents a collection of IntegerCopyNumberSegment for a sample.

Constructor Summary

Constructors

Constructor and Description
IntegerCopyNumberSegmentCollection(java.io.File inputFile)
IntegerCopyNumberSegmentCollection(SampleLocatableMetadata metadata, java.util.List<IntegerCopyNumberSegment> integerCopyNumberSegmentList)

Method Summary

Methods inherited from class org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractSampleLocatableCollection

getMetadataType

Methods inherited from class org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractLocatableCollection

getComparator, getIntervals, getOverlapDetector, getShardedCollectionSortOrder

Methods inherited from class org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractRecordCollection

equals, getMetadata, getRecords, hashCode, size, toString, write

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

IntegerCopyNumberSegmentCollection

public IntegerCopyNumberSegmentCollection(java.io.File inputFile)

IntegerCopyNumberSegmentCollection

public IntegerCopyNumberSegmentCollection(SampleLocatableMetadata metadata,
                                          java.util.List<IntegerCopyNumberSegment> integerCopyNumberSegmentList)