org.broadinstitute.hellbender.tools.funcotator

Class FuncotatorUtils.TranscriptCodingSequenceException

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

org.broadinstitute.hellbender.exceptions.GATKException

org.broadinstitute.hellbender.tools.funcotator.FuncotatorUtils.TranscriptCodingSequenceException

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

FuncotatorUtils

public static class FuncotatorUtils.TranscriptCodingSequenceException
extends GATKException

Class representing exceptions that arise when trying to create a coding sequence for a variant:

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.exceptions.GATKException

GATKException.MissingReadField, GATKException.ReadAttributeTypeMismatch, GATKException.ShouldNeverReachHereException

Constructor Summary

Constructors

Constructor and Description
TranscriptCodingSequenceException(java.lang.String msg)
TranscriptCodingSequenceException(java.lang.String msg, java.lang.Throwable throwable)

Method Summary

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TranscriptCodingSequenceException

public TranscriptCodingSequenceException(java.lang.String msg)

TranscriptCodingSequenceException

public TranscriptCodingSequenceException(java.lang.String msg,
                                         java.lang.Throwable throwable)