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Hierarchy For Package org.broadinstitute.hellbender.tools.spark.sv.discovery
Package Hierarchies:
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Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.tools.spark.sv.discovery.alignment.
AlignedContigGenerator
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoverFromLocalAssemblyContigAlignmentsSpark.SAMFormattedContigAlignmentParser
(implements java.io.Serializable)
org.broadinstitute.hellbender.tools.spark.sv.discovery.
AnnotatedVariantProducer
(implements java.io.Serializable)
org.broadinstitute.hellbender.cmdline.
CommandLineProgram
(implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
org.broadinstitute.hellbender.engine.spark.
SparkCommandLineProgram
(implements java.io.Serializable)
org.broadinstitute.hellbender.engine.spark.
GATKSparkTool
org.broadinstitute.hellbender.tools.spark.sv.discovery.
DiscoverVariantsFromContigAlignmentsSAMSpark
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoverFromLocalAssemblyContigAlignmentsSpark
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoverFromLocalAssemblyContigAlignmentsSpark.AssemblyContigsClassifiedByAlignmentSignatures
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoveryInputMetaData
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoveryInputMetaData.ReferenceData
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoveryInputMetaData.SampleSpecificData
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvDiscoveryUtils
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SvType
org.broadinstitute.hellbender.tools.spark.sv.discovery.
BreakEndVariantType
org.broadinstitute.hellbender.tools.spark.sv.discovery.
BreakEndVariantType.InvSuspectBND
org.broadinstitute.hellbender.tools.spark.sv.discovery.
BreakEndVariantType.TransLocBND
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.Deletion
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.DuplicationInverted
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.DuplicationTandem
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.ImpreciseDeletion
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.Insertion
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.Inversion
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.tools.spark.sv.discovery.
SimpleSVType.TYPES
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