Hierarchy For Package org.broadinstitute.hellbender.tools.spark.sv

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.alignment.AlignedContigGenerator
    • org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryPipelineSpark.InMemoryAlignmentParser (implements scala.Serializable)
  • org.broadinstitute.hellbender.cmdline.CommandLineProgram (implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
    • org.broadinstitute.hellbender.engine.spark.SparkCommandLineProgram (implements java.io.Serializable)
      • org.broadinstitute.hellbender.engine.spark.GATKSparkTool
        • org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryPipelineSpark
  • org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryArgumentCollection (implements java.io.Serializable)
  • org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryArgumentCollection.DiscoverVariantsFromContigsAlignmentsSparkArgumentCollection (implements java.io.Serializable)
  • org.broadinstitute.hellbender.tools.spark.sv.StructuralVariationDiscoveryArgumentCollection.FindBreakpointEvidenceSparkArgumentCollection (implements java.io.Serializable)