public static final class BreakpointEvidence.OutiesPair extends BreakpointEvidence.DiscordantReadPairEvidence
Modifier and Type | Class and Description |
---|---|
static class |
BreakpointEvidence.OutiesPair.Serializer |
BreakpointEvidence.DiscordantReadPairEvidence, BreakpointEvidence.ExternalEvidence, BreakpointEvidence.InterContigPair, BreakpointEvidence.LargeIndel, BreakpointEvidence.MateUnmapped, BreakpointEvidence.OutiesPair, BreakpointEvidence.ReadEvidence, BreakpointEvidence.SameStrandPair, BreakpointEvidence.SplitRead, BreakpointEvidence.TemplateSizeAnomaly, BreakpointEvidence.WeirdTemplateSize
MATE_ALIGNMENT_LENGTH_UNCERTAINTY, target, targetForwardStrand, targetQuality
Modifier and Type | Method and Description |
---|---|
protected void |
serialize(com.esotericsoftware.kryo.Kryo kryo,
com.esotericsoftware.kryo.io.Output output) |
java.lang.String |
toString() |
getDistalTargets, getMateForwardStrand, getMateTargetInterval, hasDistalTargets
getCigarString, getFragmentOrdinal, getMappingQuality, getTemplateName, getTemplateSize, isEvidenceUpstreamOfBreakpoint, stringRep
equalFields, getLocation, getWeight, isValidated, setValidated
protected void serialize(com.esotericsoftware.kryo.Kryo kryo, com.esotericsoftware.kryo.io.Output output)
serialize
in class BreakpointEvidence.DiscordantReadPairEvidence
public java.lang.String toString()
toString
in class BreakpointEvidence.ReadEvidence