org.broadinstitute.hellbender.tools.spark.sv.evidence

Class BreakpointEvidence.SameStrandPair

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.ReadEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.DiscordantReadPairEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.SameStrandPair

Enclosing class:

BreakpointEvidence

public static final class BreakpointEvidence.SameStrandPair
extends BreakpointEvidence.DiscordantReadPairEvidence

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	BreakpointEvidence.SameStrandPair.Serializer

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

BreakpointEvidence.DiscordantReadPairEvidence, BreakpointEvidence.ExternalEvidence, BreakpointEvidence.InterContigPair, BreakpointEvidence.LargeIndel, BreakpointEvidence.MateUnmapped, BreakpointEvidence.OutiesPair, BreakpointEvidence.ReadEvidence, BreakpointEvidence.SameStrandPair, BreakpointEvidence.SplitRead, BreakpointEvidence.TemplateSizeAnomaly, BreakpointEvidence.WeirdTemplateSize

Field Summary

Fields inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.DiscordantReadPairEvidence

MATE_ALIGNMENT_LENGTH_UNCERTAINTY, target, targetForwardStrand, targetQuality

Method Summary

Modifier and Type	Method and Description
java.lang.String	toString()

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.DiscordantReadPairEvidence

getDistalTargets, getMateForwardStrand, getMateTargetInterval, hasDistalTargets, serialize

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.ReadEvidence

getCigarString, getFragmentOrdinal, getMappingQuality, getTemplateName, getTemplateSize, isEvidenceUpstreamOfBreakpoint, stringRep

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

equalFields, getLocation, getWeight, isValidated, setValidated

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class BreakpointEvidence.ReadEvidence