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Hierarchy For Package org.broadinstitute.hellbender.tools.walkers.genotyper
Package Hierarchies:
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Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.tools.walkers.genotyper.
AlleleSubsettingUtils
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeAlleleCounts
(implements java.lang.Comparable<T>)
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeCalculationArgumentCollection
(implements java.io.Serializable)
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeLikelihoodCalculator
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeLikelihoodCalculators
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypingData
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>, org.broadinstitute.hellbender.utils.genotyper.
SampleList
)
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypingEngine
<Config>
org.broadinstitute.hellbender.tools.walkers.genotyper.
MinimalGenotypingEngine
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypingGivenAllelesUtils
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypingLikelihoods
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>, org.broadinstitute.hellbender.utils.genotyper.
SampleList
)
org.broadinstitute.hellbender.tools.walkers.genotyper.
HeterogeneousPloidyModel
(implements org.broadinstitute.hellbender.tools.walkers.genotyper.
PloidyModel
)
org.broadinstitute.hellbender.tools.walkers.genotyper.
HomogeneousPloidyModel
(implements org.broadinstitute.hellbender.tools.walkers.genotyper.
PloidyModel
)
org.broadinstitute.hellbender.tools.walkers.genotyper.
IndependentSampleGenotypesModel
org.broadinstitute.hellbender.tools.walkers.genotyper.
StandardCallerArgumentCollection
(implements java.io.Serializable)
org.broadinstitute.hellbender.tools.walkers.genotyper.
UnifiedArgumentCollection
htsjdk.variant.variantcontext.VariantContext (implements htsjdk.tribble.Feature, java.io.Serializable)
org.broadinstitute.hellbender.tools.walkers.genotyper.
VariantCallContext
Interface Hierarchy
java.util.function.Function<T,R>
java.util.function.UnaryOperator<T>
org.broadinstitute.hellbender.tools.walkers.genotyper.
AlleleLikelihoodMatrixMapper
<A>
org.broadinstitute.hellbender.utils.genotyper.
SampleList
org.broadinstitute.hellbender.tools.walkers.genotyper.
PloidyModel
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeAssignmentMethod
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypeLikelihoodsCalculationModel
org.broadinstitute.hellbender.tools.walkers.genotyper.
GenotypingOutputMode
org.broadinstitute.hellbender.tools.walkers.genotyper.
OutputMode
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