public final class GencodeGtfFeatureBaseData
extends java.lang.Object
GencodeGtfFeature
This is designed to be a basic dummy class to make feature instantiation easier.
Created by jonn on 8/11/17.Constructor and Description |
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GencodeGtfFeatureBaseData() |
GencodeGtfFeatureBaseData(int featureOrderNumber,
java.lang.String chromosomeName,
GencodeGtfFeature.AnnotationSource annotationSource,
GencodeGtfFeature.FeatureType featureType,
int genomicStartLocation,
int genomicEndLocation,
htsjdk.tribble.annotation.Strand genomicStrand,
GencodeGtfFeature.GenomicPhase genomicPhase,
java.lang.String geneId,
java.lang.String transcriptId,
GencodeGtfFeature.GeneTranscriptType geneType,
GencodeGtfFeature.GeneTranscriptStatus geneStatus,
java.lang.String geneName,
GencodeGtfFeature.GeneTranscriptType transcriptType,
GencodeGtfFeature.GeneTranscriptStatus transcriptStatus,
java.lang.String transcriptName,
int exonNumber,
java.lang.String exonId,
GencodeGtfFeature.LocusLevel locusLevel,
java.util.List<GencodeGtfFeature.OptionalField<?>> optionalFields,
java.lang.String anonymousOptionalFields) |
Modifier and Type | Method and Description |
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boolean |
equals(java.lang.Object that) |
int |
hashCode() |
public int featureOrderNumber
public SimpleInterval genomicPosition
public GencodeGtfFeature.AnnotationSource annotationSource
public GencodeGtfFeature.FeatureType featureType
public htsjdk.tribble.annotation.Strand genomicStrand
public GencodeGtfFeature.GenomicPhase genomicPhase
public java.lang.String geneId
public java.lang.String transcriptId
public GencodeGtfFeature.GeneTranscriptStatus geneStatus
public GencodeGtfFeature.GeneTranscriptType geneType
public java.lang.String geneName
public GencodeGtfFeature.GeneTranscriptType transcriptType
public GencodeGtfFeature.GeneTranscriptStatus transcriptStatus
public java.lang.String transcriptName
public int exonNumber
public java.lang.String exonId
public GencodeGtfFeature.LocusLevel locusLevel
public java.util.List<GencodeGtfFeature.OptionalField<?>> optionalFields
public java.lang.String anonymousOptionalFields
public GencodeGtfFeatureBaseData()
public GencodeGtfFeatureBaseData(int featureOrderNumber, java.lang.String chromosomeName, GencodeGtfFeature.AnnotationSource annotationSource, GencodeGtfFeature.FeatureType featureType, int genomicStartLocation, int genomicEndLocation, htsjdk.tribble.annotation.Strand genomicStrand, GencodeGtfFeature.GenomicPhase genomicPhase, java.lang.String geneId, java.lang.String transcriptId, GencodeGtfFeature.GeneTranscriptType geneType, GencodeGtfFeature.GeneTranscriptStatus geneStatus, java.lang.String geneName, GencodeGtfFeature.GeneTranscriptType transcriptType, GencodeGtfFeature.GeneTranscriptStatus transcriptStatus, java.lang.String transcriptName, int exonNumber, java.lang.String exonId, GencodeGtfFeature.LocusLevel locusLevel, java.util.List<GencodeGtfFeature.OptionalField<?>> optionalFields, java.lang.String anonymousOptionalFields)