Hierarchy For Package org.broadinstitute.hellbender.utils.codecs.gencode

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • htsjdk.tribble.AbstractFeatureCodec<FEATURE_TYPE,SOURCE> (implements htsjdk.tribble.FeatureCodec<FEATURE_TYPE,SOURCE>)
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfCodec
  • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature (implements java.lang.Comparable<T>, htsjdk.tribble.Feature)
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfCDSFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfExonFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfGeneFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfSelenocysteineFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfStartCodonFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfStopCodonFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfTranscriptFeature
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfUTRFeature
  • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.OptionalField<T>
  • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeatureBaseData

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.LocusLevel
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.FeatureType
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.FeatureTag
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.GenomicPhase
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.RemapTargetStatus
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.AnnotationSource
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.GeneTranscriptType
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.GeneTranscriptStatus
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.RemapStatus
    • org.broadinstitute.hellbender.utils.codecs.gencode.GencodeGtfFeature.TranscriptSupportLevel