org.broadinstitute.hellbender.utils.genotyper

Interface AlleleListPermutation<A extends htsjdk.variant.variantcontext.Allele>

All Superinterfaces:

AlleleList<A>, Permutation<A>

All Known Implementing Classes:

AlleleList.ActualPermutation, AlleleList.NonPermutation

public interface AlleleListPermutation<A extends htsjdk.variant.variantcontext.Allele>
extends Permutation<A>, AlleleList<A>

Marks allele list permutation implementation classes.

Nested Class Summary

Nested classes/interfaces inherited from interface org.broadinstitute.hellbender.utils.genotyper.AlleleList

AlleleList.ActualPermutation<A extends htsjdk.variant.variantcontext.Allele>, AlleleList.NonPermutation<A extends htsjdk.variant.variantcontext.Allele>

Field Summary

Fields inherited from interface org.broadinstitute.hellbender.utils.genotyper.AlleleList

EMPTY_LIST

Method Summary

Methods inherited from interface org.broadinstitute.hellbender.utils.collections.Permutation

fromIndex, fromList, fromSize, isKept, isNonPermuted, isPartial, toIndex, toList, toSize

Methods inherited from interface org.broadinstitute.hellbender.utils.genotyper.AlleleList

asListOfAlleles, containsAllele, emptyAlleleList, equals, getAllele, indexOfAllele, indexOfReference, numberOfAlleles, permutation