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Hierarchy For Package org.broadinstitute.hellbender.utils.genotyper
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.utils.genotyper.
AlleleList.ActualPermutation
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleListPermutation
<A>)
org.broadinstitute.hellbender.utils.genotyper.
AlleleList.NonPermutation
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleListPermutation
<A>)
org.broadinstitute.hellbender.utils.genotyper.
IndexedAlleleList
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>)
org.broadinstitute.hellbender.utils.genotyper.
IndexedSampleList
(implements org.broadinstitute.hellbender.utils.genotyper.
SampleList
)
org.broadinstitute.hellbender.utils.genotyper.
ProbabilityVector
org.broadinstitute.hellbender.utils.genotyper.
ReadLikelihoods
<A> (implements org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>, org.broadinstitute.hellbender.utils.genotyper.
SampleList
)
org.broadinstitute.hellbender.utils.genotyper.
UnfilledReadsLikelihoods
<A>
org.broadinstitute.hellbender.utils.genotyper.
ReadLikelihoods.BestAllele
Interface Hierarchy
org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>
org.broadinstitute.hellbender.utils.genotyper.
AlleleListPermutation
<A> (also extends org.broadinstitute.hellbender.utils.collections.
Permutation
<E>)
org.broadinstitute.hellbender.utils.genotyper.
LikelihoodMatrix
<A>
org.broadinstitute.hellbender.utils.collections.
Permutation
<E>
org.broadinstitute.hellbender.utils.genotyper.
AlleleListPermutation
<A> (also extends org.broadinstitute.hellbender.utils.genotyper.
AlleleList
<A>)
org.broadinstitute.hellbender.utils.genotyper.
SampleList
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.genotyper.
DiploidGenotype
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