org.broadinstitute.hellbender.cmdline.argumentcollections

Class SequenceDictionaryValidationArgumentCollection.StandardValidationCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.SequenceDictionaryValidationArgumentCollection.StandardValidationCollection

All Implemented Interfaces:

SequenceDictionaryValidationArgumentCollection

Enclosing interface:

SequenceDictionaryValidationArgumentCollection

public static class SequenceDictionaryValidationArgumentCollection.StandardValidationCollection
extends java.lang.Object
implements SequenceDictionaryValidationArgumentCollection

most tools will want to use this, it defaults to performing sequence dictionary validation but provides the option to disable it

Nested Class Summary

Nested classes/interfaces inherited from interface org.broadinstitute.hellbender.cmdline.argumentcollections.SequenceDictionaryValidationArgumentCollection

SequenceDictionaryValidationArgumentCollection.NoValidationCollection, SequenceDictionaryValidationArgumentCollection.StandardValidationCollection

Constructor Summary

Constructors

Constructor and Description
StandardValidationCollection()

Method Summary

Modifier and Type	Method and Description
boolean	performSequenceDictionaryValidation() Should sequence dictionary validation be performed

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StandardValidationCollection

public StandardValidationCollection()

Method Detail

performSequenceDictionaryValidation

public boolean performSequenceDictionaryValidation()

Description copied from interface: SequenceDictionaryValidationArgumentCollection

Should sequence dictionary validation be performed

Specified by:

performSequenceDictionaryValidation in interface SequenceDictionaryValidationArgumentCollection

Returns:

true if the tool should perform sequence dictionary validation