org.broadinstitute.hellbender.cmdline.argumentcollections

Interface SequenceDictionaryValidationArgumentCollection

All Known Implementing Classes:

SequenceDictionaryValidationArgumentCollection.NoValidationCollection, SequenceDictionaryValidationArgumentCollection.StandardValidationCollection

public interface SequenceDictionaryValidationArgumentCollection

interface for argument collections that control how sequence dictionary validation should be handled

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static class	SequenceDictionaryValidationArgumentCollection.NoValidationCollection doesn't provide a configuration argument, and always returns false, useful for tools that do not want to perform sequence dictionary validation, like aligners
static class	SequenceDictionaryValidationArgumentCollection.StandardValidationCollection most tools will want to use this, it defaults to performing sequence dictionary validation but provides the option to disable it

Method Summary

Modifier and Type	Method and Description
boolean	performSequenceDictionaryValidation() Should sequence dictionary validation be performed

Method Detail

performSequenceDictionaryValidation

boolean performSequenceDictionaryValidation()

Should sequence dictionary validation be performed

Returns:

true if the tool should perform sequence dictionary validation