picard.sam.SamErrorMetric

Class ReadBaseStratification.BinnedReadCycleStratifier

java.lang.Object

picard.sam.SamErrorMetric.ReadBaseStratification.BinnedReadCycleStratifier

All Implemented Interfaces:

ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.CycleBin>

Enclosing class:

ReadBaseStratification

public static class ReadBaseStratification.BinnedReadCycleStratifier
extends java.lang.Object
implements ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.CycleBin>

Stratifies into quintiles of read cycle.

Constructor Summary

Constructors

Constructor and Description
BinnedReadCycleStratifier()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getSuffix()
ReadBaseStratification.CycleBin	stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinnedReadCycleStratifier

public BinnedReadCycleStratifier()

Method Detail

stratify

public ReadBaseStratification.CycleBin stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                                                htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Specified by:

stratify in interface ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.CycleBin>

getSuffix

public java.lang.String getSuffix()

Specified by:

getSuffix in interface ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.CycleBin>