Hierarchy For Package picard.sam.SamErrorMetric

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • picard.sam.SamErrorMetric.BaseErrorAggregation<CALCULATOR>
  • picard.sam.SamErrorMetric.BaseErrorCalculator (implements picard.sam.SamErrorMetric.BaseCalculator)
    • picard.sam.SamErrorMetric.IndelErrorCalculator
    • picard.sam.SamErrorMetric.OverlappingReadsErrorCalculator
    • picard.sam.SamErrorMetric.SimpleErrorCalculator
  • picard.cmdline.CommandLineProgram
    • picard.sam.SamErrorMetric.CollectSamErrorMetrics
  • htsjdk.samtools.metrics.MetricBase
    • picard.analysis.MergeableMetricBase
      • picard.sam.SamErrorMetric.ErrorMetric
        • picard.sam.SamErrorMetric.BaseErrorMetric
          • picard.sam.SamErrorMetric.IndelErrorMetric
        • picard.sam.SamErrorMetric.OverlappingErrorMetric
  • picard.sam.SamErrorMetric.ReadBaseStratification
  • picard.sam.SamErrorMetric.ReadBaseStratification.BinnedReadCycleStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  • picard.sam.SamErrorMetric.ReadBaseStratification.CigarOperatorsInReadStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.CollectionStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  • picard.sam.SamErrorMetric.ReadBaseStratification.ConsensusStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellTileStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.GCContentStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.IndelLengthStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  • picard.sam.SamErrorMetric.ReadBaseStratification.IndelsInReadStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymerStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  • picard.sam.SamErrorMetric.ReadBaseStratification.MismatchesInReadStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  • picard.sam.SamErrorMetric.ReadBaseStratification.NsInReadStratifier
  • picard.sam.SamErrorMetric.ReadBaseStratification.PairStratifier<T,R> (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)

Interface Hierarchy

• picard.sam.SamErrorMetric.BaseCalculator
• picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymer
    • picard.sam.SamErrorMetric.ReadBaseStratification.ReadDirection
    • picard.sam.SamErrorMetric.ReadBaseStratification.ProperPaired
    • picard.sam.SamErrorMetric.ReadBaseStratification.Consensus
    • picard.sam.SamErrorMetric.ReadBaseStratification.CycleBin
    • picard.sam.SamErrorMetric.ReadBaseStratification.ReadOrdinality
    • picard.sam.SamErrorMetric.ReadBaseStratification.PairOrientation