picard.sam.SamErrorMetric

Class ReadBaseStratification.PairStratifier<T extends java.lang.Comparable<T>,R extends java.lang.Comparable<R>>

java.lang.Object

picard.sam.SamErrorMetric.ReadBaseStratification.PairStratifier<T,R>

All Implemented Interfaces:

ReadBaseStratification.RecordAndOffsetStratifier<Pair<T,R>>

Enclosing class:

ReadBaseStratification

public static class ReadBaseStratification.PairStratifier<T extends java.lang.Comparable<T>,R extends java.lang.Comparable<R>>
extends java.lang.Object
implements ReadBaseStratification.RecordAndOffsetStratifier<Pair<T,R>>

A PairStratifier is a stratifier that uses two other stratifiers to inform the stratification. For a given input, the result is the Pair of outputs that the two stratifiers return. The suffix for this stratifier is generated from the suffixes of the two provided stratifiers.

Constructor Summary

Constructors

Constructor and Description
PairStratifier(ReadBaseStratification.RecordAndOffsetStratifier<T> a, ReadBaseStratification.RecordAndOffsetStratifier<R> b)

Method Summary

Modifier and Type	Method and Description
java.lang.String	getSuffix()
Pair<T,R>	stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PairStratifier

public PairStratifier(ReadBaseStratification.RecordAndOffsetStratifier<T> a,
                      ReadBaseStratification.RecordAndOffsetStratifier<R> b)

Method Detail

stratify

public Pair<T,R> stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                          htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Specified by:

stratify in interface ReadBaseStratification.RecordAndOffsetStratifier<Pair<T extends java.lang.Comparable<T>,R extends java.lang.Comparable<R>>>

getSuffix

public java.lang.String getSuffix()

Specified by:

getSuffix in interface ReadBaseStratification.RecordAndOffsetStratifier<Pair<T extends java.lang.Comparable<T>,R extends java.lang.Comparable<R>>>