org.broadinstitute.hellbender.engine

Class ReadContextData

java.lang.Object

org.broadinstitute.hellbender.engine.ReadContextData

All Implemented Interfaces:

java.io.Serializable

public class ReadContextData
extends java.lang.Object
implements java.io.Serializable

ReadContextData is additional data that's useful when processing reads. Currently the extra data is ReferenceBases and Variants, either of which can be null. This is intended to be a simple data storage class.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ReadContextData(ReferenceBases referenceBases, java.lang.Iterable<GATKVariant> variants)
ReadContextData(ReferenceBases referenceBases, java.util.List<GATKVariant> variants)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
ReferenceBases	getOverlappingReferenceBases()
java.lang.Iterable<GATKVariant>	getOverlappingVariants()
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ReadContextData

public ReadContextData(ReferenceBases referenceBases,
                       java.lang.Iterable<GATKVariant> variants)

ReadContextData

public ReadContextData(ReferenceBases referenceBases,
                       java.util.List<GATKVariant> variants)

Method Detail

getOverlappingReferenceBases

public ReferenceBases getOverlappingReferenceBases()

getOverlappingVariants

public java.lang.Iterable<GATKVariant> getOverlappingVariants()

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object