org.broadinstitute.hellbender.engine

Class ReadlessAssemblyRegion

java.lang.Object

org.broadinstitute.hellbender.engine.ShardBoundary

org.broadinstitute.hellbender.engine.ReadlessAssemblyRegion

All Implemented Interfaces:

htsjdk.samtools.util.Locatable, java.io.Serializable

public class ReadlessAssemblyRegion
extends ShardBoundary

A cut-down version of AssemblyRegion that doesn't store reads, used in the strict implementation of FindAssemblyRegionsSpark.

See Also:

Serialized Form

Field Summary

Fields inherited from class org.broadinstitute.hellbender.engine.ShardBoundary

interval, padded, paddedSpan

Constructor Summary

Constructors

Constructor and Description
ReadlessAssemblyRegion(AssemblyRegion assemblyRegion)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
int	hashCode()
boolean	isActive()
ShardBoundary	paddedShardBoundary()
java.lang.String	toString()

Methods inherited from class org.broadinstitute.hellbender.engine.ShardBoundary

createShard, getContig, getEnd, getInterval, getPaddedSpan, getStart

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.Locatable

contains, contigsMatch, getLengthOnReference, overlaps, withinDistanceOf

Constructor Detail

ReadlessAssemblyRegion

public ReadlessAssemblyRegion(AssemblyRegion assemblyRegion)

Method Detail

isActive

public boolean isActive()

paddedShardBoundary

public ShardBoundary paddedShardBoundary()

Overrides:

paddedShardBoundary in class ShardBoundary

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class ShardBoundary

hashCode

public int hashCode()

Overrides:

hashCode in class ShardBoundary

toString

public java.lang.String toString()

Overrides:

toString in class ShardBoundary